Get mapping vector between two software

Get a named character vector that defines the mapping between names of two software based on the mapping schema. The names of the returned vector are the names of the from software and the values are the corresponding names of the to software.

Usage

nameMapping(
  from = character(),
  to = character(),
  map = softwareMappingSchema()
)

Arguments

from

character(1) with the name of the source software.

to

character(1) with the name of the target software.

map

Optional data.frame with a custom mapping schema. If not provided, the default mapping schema defined in the package will be used. The data.frame must contain the from and to parameter as columns names.

Value

A named character vector with the mapping between the two software.

See also

Other name translation functions: guessSource(), softwareMapping(), softwareMappingSchema(), translate()

Author

Gabriele Tomè

Examples

nameMapping(from = "MS-Dial", to = "mzTab-M")
#>                      Alignment ID                        Average Mz 
#>                          "SMF_ID"              "exp_mass_to_charge" 
#>                    MS/MS included                   Average Rt(min) 
#>                                NA       "retention_time_in_seconds" 
#>                              <NA>                              <NA> 
#> "retention_time_in_seconds_start"   "retention_time_in_seconds_end" 
#>                              <NA>                   Metabolite name 
#>              "abundance_assay[1]"                   "chemical_name" 
#>                              <NA>                              <NA> 
#>             "database_identifier"                           "inchi" 
#>                          INCHIKEY                            SMILES 
#>                                NA                          "smiles" 
#>                              <NA>                            Fill % 
#>                "chemical_formula"                                NA 
#>                              LINK                       Dot product 
#>                                NA                                NA 
#>               Reverse dot product               Fragment presence % 
#>                                NA                                NA 
#>      Spectrum reference file name 
#>                                NA