Get canonical sequence from any peptidoform

Source: R/PTM-utils.R

Remove any modifications annotation on a sequence. Annotation from any type (so long as they are specified within brackets "[..]") are removed.

getCanonicalSequence(x)

Arguments

x

`character`, ProForma sequence.

Value

`character`, a `character` vector with sequences cleaned of all modifications.

Examples

getCanonicalSequence(
    c(
        "EM[-15.9949]EVEES[+79.9663]PEK",
        "EK[Acetyl]EVEES[UNIMOD:21]PEK"
    )
)
#> [1] "EMEVEESPEK" "EKEVEESPEK"