Package index

All functions

corRows()

Correlate rows of a numeric matrix

featureGroups() `featureGroups<-`()

Get or set feature group definitions from an object

groupClosest()

Group values with differences below threshold

groupConsecutive()

Grouping of sorted values into sets with smallest differences

AbundanceSimilarityParam() groupFeatures(<matrix>,<AbundanceSimilarityParam>) groupFeatures(<SummarizedExperiment>,<AbundanceSimilarityParam>)

Group features based on abundance similarities across samples

SimilarRtimeParam() groupFeatures(<numeric>,<SimilarRtimeParam>) groupFeatures(<SummarizedExperiment>,<SimilarRtimeParam>)

Group features based on approximate retention times

groupFeatures()

General Feature Grouping Concept

groupSimilarityMatrix()

Group rows of a diagonal matrix using a threshold

groupSimilarityMatrixTree()

Identifies groups with intragroup pairwise distances less than maxDiff

se

Quantified LC-MS preprocessing result test data