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matchSpectra(<Spectra>,<CompAnnotationSource>,<Param>) show(<CompAnnotationSource>) metadata(<CompAnnotationSource>)
- Compound Annotation Sources
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CompDbSource() metadata(<CompDbSource>) show(<CompDbSource>) MassBankSource()
- Compound Annotation Sources for
CompDb databases
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matchSpectra(<Spectra>,<CompDbSource>,<Param>) CompareSpectraParam() MatchForwardReverseParam() matchSpectra(<Spectra>,<Spectra>,<CompareSpectraParam>) matchSpectra(<Spectra>,<CompDb>,<Param>) matchSpectra(<Spectra>,<Spectra>,<MatchForwardReverseParam>)
- Matching MS Spectra against a reference
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addMatches() endoapply() filterMatches() matchedData() queryVariables() targetVariables() Matched() length(<Matched>) show(<Matched>) `[`(<Matched>,<ANY>,<ANY>,<ANY>) matches() target() query(<Matched>) targetIndex() queryIndex() whichTarget() whichQuery() `$`(<Matched>) colnames(<Matched>) scoreVariables() pruneTarget() SelectMatchesParam() TopRankedMatchesParam() ScoreThresholdParam() SingleMatchParam() lapply(<Matched>)
- Representation of generic objects matches
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MatchedSpectra() spectraVariables(<MatchedSpectra>) queryVariables(<MatchedSpectra>) targetVariables(<MatchedSpectra>) colnames(<MatchedSpectra>) `$`(<MatchedSpectra>) spectraData(<MatchedSpectra>) matchedData(<MatchedSpectra>) addProcessing(<MatchedSpectra>) plotSpectraMirror(<MatchedSpectra>) setBackend(<MatchedSpectra>,<MsBackend>)
- Representation of Spectra matches
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createStandardMixes()
- Create Standard Mixes from a Matrix of Standard Compounds
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matchFormula()
- Chemical Formula Matching
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matchSpectra()
- Spectral matching
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ValueParam() MzParam() Mass2MzParam() Mass2MzRtParam() MzRtParam() Mz2MassParam() Mz2MassRtParam() matchValues()
- Matching of numeric values
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validateMatchedSpectra()
- Validating MatchedSpectra
