Package index

All functions

AlabasterParam() saveObject(<MsBackendCached>) saveMsObject(<MsBackendCached>,<AlabasterParam>) readMsObject(<MsBackendCached>,<AlabasterParam>) saveObject(<MsBackendMetaboLights>) saveMsObject(<MsBackendMetaboLights>,<AlabasterParam>) readMsObject(<MsBackendMetaboLights>,<AlabasterParam>) saveObject(<MsBackendMzR>) saveMsObject(<MsBackendMzR>,<AlabasterParam>) readMsObject(<MsBackendMzR>,<AlabasterParam>) saveObject(<MsBackendOfflineSql>) saveMsObject(<MsBackendOfflineSql>,<AlabasterParam>) readMsObject(<MsBackendOfflineSql>,<AlabasterParam>) saveObject(<MsExperiment>) saveMsObject(<MsExperiment>,<AlabasterParam>) readMsObject(<MsExperiment>,<AlabasterParam>) saveObject(<Spectra>) saveMsObject(<Spectra>,<AlabasterParam>) readMsObject(<Spectra>,<AlabasterParam>) saveObject(<XcmsExperiment>) saveMsObject(<XcmsExperiment>,<AlabasterParam>) readMsObject(<XcmsExperiment>,<AlabasterParam>)

Store MS data objects using the alabaster framework

MetaboLightsParam() readMsObject(<MsExperiment>,<MetaboLightsParam>)

Load content from a MetaboLights study

PlainTextParam() saveMsObject(<MsBackendCached>,<PlainTextParam>) readMsObject(<MsBackendCached>,<PlainTextParam>) readMsObject(<MsBackendMetaboLights>,<PlainTextParam>) saveMsObject(<MsBackendMzR>,<PlainTextParam>) readMsObject(<MsBackendMzR>,<PlainTextParam>) saveMsObject(<MsBackendOfflineSql>,<PlainTextParam>) readMsObject(<MsBackendOfflineSql>,<PlainTextParam>) saveMsObject(<MsExperiment>,<PlainTextParam>) readMsObject(<MsExperiment>,<PlainTextParam>) saveMsObject(<Spectra>,<PlainTextParam>) readMsObject(<Spectra>,<PlainTextParam>) saveMsObject(<XcmsExperiment>,<PlainTextParam>) readMsObject(<XcmsExperiment>,<PlainTextParam>)

Store contents of MS objects as plain text files

mzTabParam() saveMsObject(<XcmsExperiment>,<mzTabParam>)

Store xcms preprocessing results to a file in mzTab-M format

saveMsObject() readMsObject()

Save and load MS data objects to and from different file formats