Package index • MsCoreUtils

All functions

colMeansMat() colSumsMat() aggregate_by_matrix() aggregate_by_vector(): Aggreagate quantitative features

bin(): Binning

breaks_ppm(): Sequence with increasing difference between elements

isPeaksMatrix(): Check functions

asInteger(): Coerce functions

colCounts(): Counts the number of features

common_path(): Extract the common file path

ndotproduct() dotproduct() neuclidean() navdist() nspectraangle(): Spectra Distance/Similarity Measurements

entropy() nentropy(): Spectral entropy

estimateBaseline() estimateBaselineConvexHull() estimateBaselineMedian() estimateBaselineSnip() estimateBaselineTopHat(): Estimates the Baseline of a Mass Spectrum

force_sorted(): Forcing a numeric vector into a monotonously increasing sequence.

rt2numeric() rt2character() formatRt(): Format Retention Time

gnps() join_gnps(): GNPS spectrum similarity scores

group(): Grouping of numeric values by similarity

i2index(): Input parameter check for subsetting operations

impute_matrix() imputeMethods() impute_neighbour_average() impute_knn() impute_mle() impute_bpca() impute_RF() impute_mixed() impute_min() impute_MinDet() impute_MinProb() impute_QRILC() impute_zero() impute_with() impute_fun() getImputeMargin(): Quantitative mass spectrometry data imputation

localMaxima(): Local Maxima

closest() common() join(): Relaxed Value Matching

maxi(): Maximum MS Intensity Value

medianPolish(): Return the Median Polish (Robust Twoway Decomposition) of a matrix

noise(): Noise Estimation

normalizeMethods() normalize_matrix(): Quantitative data normalisation

ppm(): PPM - Parts per Million

between() `%between%`: Range helper functions

rbindFill(): Combine R Objects by Row

reduce(): Reduce overlapping numeric ranges to disjoined ranges

refineCentroids(): Refine Peak Centroids

rla() rowRla(): Calculate relative log abundances

robustSummary(): Return the Robust Expression Summary of a matrix

smooth() coefMA() coefWMA() coefSG(): Smoothing

sumi(): Summing MS Intensity Values

validPeaksMatrix(): Validation functions

valleys(): Find Peak Valleys

vapply1c() vapply1d() vapply1l(): vapply wrappers

which.first() which.last(): Which is the first/last TRUE value.