QFeatures 1.5.3

  • feat: aggregation by adjacency matrix
  • New adjacencyMatrix,SummarizedExperiment and adjacencyMatrix,QFeatures methods using ProtGenerics::adjacencyMatrix (available in version >= 1.27.1).

QFeatures 1.5.2

QFeatures 1.5.1

  • Document the use of peptide/protein adjacency matrices in aggregateFeatures() and new adjacencyMatrix() accessor.

QFeatures 1.5.0

  • New devel version (Bioc 3.15)

QFeatures 1.3.6

  • New feat3 example data to demonstrate and test more complex AssayLinks structure.
  • Improved the plot,QFeautres function to avoid cluttering of nodes.
  • Adapted the visualization vignette using feat3.

QFeatures 1.3.5

  • Add plot,QFeatures and visualisation vignette.

QFeatures 1.3.4

  • Fixed bug that produced invalid AssayLinks when using filterNA.

QFeatures 1.3.3

  • Improved validity checks on AssayLinks
  • Fixed the subsetting of AssayLinks to ensure consistent data

QFeatures 1.3.2

  • Add logo to package
  • Fix class coercion error (see #b9ce7f1e9)

QFeatures 1.3.1

  • Added rbindRowData: a function to select variables in the rowData and bind it in a single DataFrame
  • Added rowData<-: this new method replaces replaceRowDataCols to offer a more standardize functionality.
  • Added a new section in the QFeatures vignette to expand on how to manipulate the metadata within a QFeatures object

QFeatures 1.3.0

  • New devel version (Bioc 3.14)

QFeatures 1.2.0

  • New release version (Bioc 3.13)

QFeatures 1.1.4

  • Added replaceRowDataCols and removeRowDataCols, two functions to streamline manipulation of rowData within a QFeature object.

QFeatures 1.1.3

  • Added countUniqueFeatures, a function to count the number of unique features per sample.

QFeatures 1.1.2

QFeatures 1.1.1

  • Fix typo in vignette
  • Improve first paragraph in intro vignette.

QFeatures 1.1.0

  • New Bioconductor devel version

QFeatures 0.99.4

  • Fix: improved nNA with new implementation and additional unit tests <2020-10-23 Fri>

QFeatures 0.99.3

  • New feature: the longFormat function returns a long DataFrame with quantitative data along with metadata (see #116) <2020-10-8 Thu>
  • New feature: the rowData method returns a list containing the rowData for all assays (see #86) <2020-09-16 Wed>
  • Keep colnames when reading a single column assay (see #108) <2020-09-09 Wed>

QFeatures 0.99.2

  • Added infIsNA.
  • Add Christophe Vanderaa as an author.

QFeatures 0.99.1

QFeatures 0.99.0

  • Bioconductor submission