NEWS.md
adjacencyMatrix,SummarizedExperiment
and adjacencyMatrix,QFeatures
methods using ProtGenerics::adjacencyMatrix
(available in version >= 1.27.1).updateObject()
method for QFeatures
objects.aggregateFeatures()
and new adjacencyMatrix()
accessor.feat3
example data to demonstrate and test more complex AssayLinks structure.plot,QFeautres
function to avoid cluttering of nodes.feat3
.AssayLinks
AssayLinks
to ensure consistent datarbindRowData
: a function to select variables in the rowData
and bind it in a single DataFrame
rowData<-
: this new method replaces replaceRowDataCols
to offer a more standardize functionality.QFeatures
vignette to expand on how to manipulate the metadata within a QFeatures
objectreplaceRowDataCols
and removeRowDataCols
, two functions to streamline manipulation of rowData within a QFeature
object.countUniqueFeatures
, a function to count the number of unique features per sample.Manually install preprocessCore (see https://github.com/Bioconductor/bioconductor_docker/issues/22 for details) to use quantile normalisation in vignette and tests.
Update vignette to show normalize()
and logTransform()
directly on a QFeatures
object and reference the QFeaturesWorkshop2020 workshop and WSBIM2122 chap 8.
nNA
with new implementation and additional unit tests <2020-10-23 Fri>longFormat
function returns a long DataFrame
with quantitative data along with metadata (see #116) <2020-10-8 Thu>rowData
method returns a list containing the rowData
for all assays (see #86) <2020-09-16 Wed>