NEWS.md
adjacencyMatrix,SummarizedExperiment and adjacencyMatrix,QFeatures methods using ProtGenerics::adjacencyMatrix (available in version >= 1.27.1).updateObject() method for QFeatures objects.aggregateFeatures() and new adjacencyMatrix() accessor.feat3 example data to demonstrate and test more complex AssayLinks structure.plot,QFeautres function to avoid cluttering of nodes.feat3.AssayLinks
AssayLinks to ensure consistent datarbindRowData: a function to select variables in the rowData and bind it in a single DataFrame
rowData<-: this new method replaces replaceRowDataCols to offer a more standardize functionality.QFeatures vignette to expand on how to manipulate the metadata within a QFeatures objectreplaceRowDataCols and removeRowDataCols, two functions to streamline manipulation of rowData within a QFeature object.countUniqueFeatures, a function to count the number of unique features per sample.Manually install preprocessCore (see https://github.com/Bioconductor/bioconductor_docker/issues/22 for details) to use quantile normalisation in vignette and tests.
Update vignette to show normalize() and logTransform() directly on a QFeatures object and reference the QFeaturesWorkshop2020 workshop and WSBIM2122 chap 8.
nNA with new implementation and additional unit tests <2020-10-23 Fri>longFormat function returns a long DataFrame with quantitative data along with metadata (see #116) <2020-10-8 Thu>rowData method returns a list containing the rowData for all assays (see #86) <2020-09-16 Wed>