Package index

All functions

backendInitialize(<MsBackendPy>) length(<MsBackendPy>) spectraVariables(<MsBackendPy>) spectraData(<MsBackendPy>) `spectraData<-`(<MsBackendPy>) peaksData(<MsBackendPy>) `peaksData<-`(<MsBackendPy>) `$`(<MsBackendPy>) `$<-`(<MsBackendPy>) `intensity<-`(<MsBackendPy>) `mz<-`(<MsBackendPy>) `spectraVariableMapping<-`(<MsBackendPy>) spectraVariableMapping(<MsBackendPy>) reindex()

A MS data backend for MS data stored in Python

CosineGreedy() CosineHungarian() ModifiedCosine() NeutralLossesCosine() compareSpectriPy(<Spectra>,<Spectra>,<CosineGreedy>) compareSpectriPy(<Spectra>,<missing>,<CosineGreedy>)

Spectra similarity calculations using Python's matchms library

spectraVariableMapping(<character>) spectraVariableMapping(<missing>) setSpectraVariableMapping() defaultSpectraVariableMapping() r_to_py(<Spectra>) rspec_to_pyspec() pyspec_to_rspec()

Converting between R and Python MS data structures

select_by_intensity() select_by_mz() remove_peaks_around_precursor_mz() normalize_intensities() filterSpectriPy(<Spectra>,<filter_param>)

Filter Spectra using Python's matchms library